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Tuesday, February 17, 2009

DBPedia enters rdf.openmolecules.net

As of tonight, rdf.openmolecules.net links to the chemistry DBPedia (1816 chemical compounds), for which I used the SPARQL given in DBPedia: lookup and autocomplete of chemistry. It's first of several steps to extend rdf.openmolecules.net to link up various chemistry database. The below figure shows the current state, where the green nodes are fully RDF-ied:

Drugs are still missing, but will add those too, and since not all entries had InChIs, SMILES were converted using CDK 1.1.5.

1 comment:

  1. Added the Drug data now. Unfortunately, creating InChIs from the SMILES for this set goes rather badly... too many ambiguities in the SMILES for many drugs...

    Total DBPedia links at 2008 now.

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