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Wednesday, November 04, 2009

Bioclipse Manager for MyExperiment.org

Some time ago I wrote about using Bioclipse to query to MyExperiment.org SPARQL end point. I think I had not mentioned that I have also written a manager to download MyExperiment Bioclipse Scripting Language (BSL) scripts (though there are no GUI elements yet):
> myexperiment.search("RDF")
[921, 928, 889]

> myexperiment.search("Kabsch")
[937]
The returned lists give the workflow numbers for matching BSL scripts, which you can then simply download with:
> var file = myexperiment.downloadWorkflow(937)
ui.open(file)