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Friday, March 09, 2012

Bioclipse and SADI

I do have to apologize to the Dumontier Lab... Michel visited us when I was still in Uppsala University (so, that's way too long ago), and we spoke about SADI, a really interesting framework for semantic computing. At thought that at the time, and I still do. But, I never got around to playing with it... but this week was so weird, I had to get my mind off... so, time for some random hacking...

Thus, a SADI manager (client) for Bioclipse. Why? Because I can. Two minutes to have the Bioclipse SDK set up a new plugin template, two hours to decide that one by one copying Maven dependencies is the worst waste of time ever, two minutes to figure out how git svn clone for just the last few Subversion commits works again, five minutes of cloning, two minutes of running mvn assembly:assembly, three minutes of figuring out what to add to the pom.xml again, one minute of running mvn assembly:single, and three minutes of waiting for the registry triples to be loaded after calling the Registry.getAllServices() method:
> sadi.listServices()
[http://sadiframework.org/examples/blast/Debaryomyces+hansenii, http://s5.semanticscience.org:8080/hbdc/hbdc, http://s7.semanticscience.org/~ben/cgi-bin/PlasmoDB/get_sequence_for_region, http://sadiframework.org/examples/blast/Nasonia+vitripennis, http://unbsj.biordf.net/temporal-reasoning-sadi/getTimeIntervalsFinishingTimeInterval, http://unbsj.biordf.net/name-search-sadi/getSimilarICD9DiseaseNames, http://unbsj.biordf.net/ncbi-sadi/getSubclassesByNCBITaxonomyClassURI, http://sadi-service.semanticscience.org/PharmGKB-SADI-Wrapper/GetPublicationRelatedGenes, http://s6.semanticscience.org:8080/sadi-ChEBI-soap-wrapper/ChebiSoapGetStatus, http://sadiframework.org/examples/blast/Aedes+aegypti, http://unbsj.biordf.net/FISHTOX-SADIServices/RNA2DNAReverseTranscriber, http://sadiframework.org/examples/blast/Zea+mays, http://unbsj.biordf.net/FISHTOX-SADIServices/NCBI_NC2SequenceService, http://sadiframework.org/examples/blast/Chlamydomonas+reinhardtii, http://sadiframework.org/examples/blast/Encephalitozoon+cuniculi, http://sadiframework.org/examples/blast/Babesia+bovis, http://sadiframework.org/examples/blast/Eragrostis+tef, http://sadi-service.semanticscience.org/sadi-AptamerBase-REST-Wrapper/Aptamerbasegetaptamerwithsequencecollectionfromquery, http://s6.semanticscience.org:8080/sadi-rest-ncbi-eutils-gene/Getncbigenepublicationdate, http://sadiframework.org/examples/blast/Cryptosporidium+parvum, http://sadiframework.org/services/getPubMedReferencesForPDB, http://sadi-service.semanticscience.org/sadi-rest-ncbi-eutils-pubmed/Getisoabbreviationfrompmid, http://sadi-service.semanticscience.org/sadi-rest-ncbi-eutils-pubmed/Getdoifrompmid, http://unbsj.biordf.net/ncbi-sadi/getNCBITaxonomyIDByClassURI, http://s5.semanticscience.org:8080/computesas/mlogp, http://unbsj.biordf.net/FISHTOX-SADIServices/RefSeqXM2ZFIN, http://unbsj.biordf.net/mi-sadi/getMutationByWildtypeProtein, http://sadiframework.org/examples/ermineJgo, http://sadi-service.semanticscience.org/PharmGKB-SADI-Wrapper/Getgenevariantsymbol, http://unbsj.biordf.net/hmdb-sadi/getSMPDBIDByHMDBID, http://tomcat.dev.biordf.net/sadi-blast/snapdragon, http://dev.biordf.net/~kawas/cgi-bin/snp2gene, http://sadiframework.org/examples/blast/Allium+cepa, http://dev.biordf.net/~kawas/cgi-bin/getGOTermAssociationsPDB, http://s6.semanticscience.org:8080/sadi-ChEBI-soap-wrapper/ChebiSoapGetDatabaseLinks, http://unbsj.biordf.net/FISHTOX-SADIServices/RefSeqXM2MGI, http://cbrass.biordf.net/hbac/hbac, http://sadi-service.semanticscience.org/PharmGKB-SADI-Wrapper/GetPublicationRelatedPharmGKBEntities, http://sadiframework.org/examples/blast/Leishmania+braziliensis, http://sparql.tw.rpi.edu/services/datafaqs/faqt/void-triples, http://sadi-service.semanticscience.org/sadi-rest-ncbi-eutils-taxonomy/Taxid2scientificname, http://s5.semanticscience.org:8080/computesas/topsa, http://sadiframework.org/examples/blastUniprot, http://s7.semanticscience.org/~ben/cgi-bin/SGD/get_child_features, http://unbsj.biordf.net/name-search-sadi/getSimilarICD10ProcedureNames, http://sadi-service.semanticscience.org/PharmGKB-SADI-Wrapper/GetGeneVariantGeneSymbol, http://s5.semanticscience.org:8080/computesas/molfor, http://s5.semanticscience.org:8080/partialpolarsurfacearea/partialpolarsurfacearea, http://unbsj.biordf.net/FISHTOX-SADIServices/ZFIN2RefSeqProtein, http://s7.semanticscience.org/~ben/cgi-bin/CGD/get_features_overlapping_region, http://unbsj.biordf.net/hmdb-sadi/getHMDBIDByOMIMID, http://s7.semanticscience.org/~ben/cgi-bin/CryptoDB/get_child_features, http://unbsj.biordf.net/icd-sadi/getDiseaseClassByICD9ID, http://sadi-service.semanticscience.org/PharmGKB-SADI-Wrapper/Getgenevariantpostflanksequence, http://sadiframework.org/examples/entrezGene2Uniprot, http://sadiframework.org/examples/blast/Trichomonas+vaginalis, http://unbsj.biordf.net/FISHTOX-SADIServices/NCBI_XP2RNAService, http://sadi-service.semanticscience.org/PharmGKB-SADI-Wrapper/GetDrugName, http://s5.semanticscience.org:8080/computesas/rncsa, http://unbsj.biordf.net/FISHTOX-SADIServices/AEExperiment2Platform, http://dev.biordf.net/~kawas/cgi-bin/entrezGene2pubmed, http://sadi-service.semanticscience.org/sadi-ChEBI-soap-wrapper/ChebiSoapGetMass, http://unbsj.biordf.net/FISHTOX-SADIServices/RefSeqNP2UniProt, http://unbsj.biordf.net/FISHTOX-SADIServices/BLASTp2RefSeqProtein, http://unbsj.biordf.net/FISHTOX-SADIServices/RefSeqAP2TAIR, http://sadi-service.semanticscience.org/PharmGKB-SADI-Wrapper/GetGeneRelatedPhenotypes, http://dev.biordf.net/~kawas/cgi-bin/getGOTermAssociationsENSEMBL, http://unbsj.biordf.net/ec-sadi/getEnzymeClassByECID, http://sadiframework.org/examples/blast/human, http://cbakerlab.unbsj.ca/lipids-sadi/getLMSDRecordBySMILES, http://sadiframework.org/examples/blast/Aspergillus+niger, http://sadiframework.org/examples/blast/Aspergillus+clavatus, http://sadiframework.org/examples/blast/Loxodonta+africana, http://sadiframework.org/examples/blast/Asparagus+officinalis, http://sadiframework.org/services/opencitations/getCitedArticles, http://unbsj.biordf.net/mi-sadi/getMIDBBioEntityByType, http://unbsj.biordf.net/mieo-sadi/getSingularAminoAcidChangeByHGVSDenotation, http://sadiframework.org/examples/blast/Solanum+tuberosum, http://sadiframework.org/examples/blast/Saccharomyces+cerevisiae, http://unbsj.biordf.net/mie-sadi/extractMutationInfoFromASCIIText, http://sadiframework.org/services/getGOTerm, http://unbsj.biordf.net/icd-sadi/getSubclassByICD9DiseaseClass, http://sadiframework.org/services/getKEGGGenesByPathway, http://unbsj.biordf.net/ncbi-sadi/getNCBITaxonomyClassByName, http://unbsj.biordf.net/name-search-sadi/getSimilarProteinNames, http://sadiframework.org/examples/linear, http://sadiframework.org/examples/blast/Paramecium+tetraurelia, http://s7.semanticscience.org/~ben/cgi-bin/SGD/get_feature_info, http://unbsj.biordf.net/FISHTOX-SADIServices/RefSeqYP2ZFIN, http://s7.semanticscience.org/~ben/cgi-bin/CryptoDB/get_features_overlapping_region, http://sadiframework.org/examples/blast/Vigna+radiata, http://cbakerlab.unbsj.ca/lipids-sadi/getLMSDRecordByFormula, http://sadiframework.org/services/opencitations/getCitingArticles, http://unbsj.biordf.net/temporal-reasoning-sadi/getTimeIntervalsAfterTimeInterval, http://unbsj.biordf.net/hmdb-sadi/getKEGGPATHWAYIDByHMDBID, http://s5.semanticscience.org:8080/computesas/wpsa3, http://unbsj.biordf.net/omim-sadi/getDiseaseNameByOMIMID, http://s5.semanticscience.org:8080/computesas/pisys, http://unbsj.biordf.net/lipid-class-sadi/classifyLipid, http://sadi-service.semanticscience.org/sadi-ChEBI-soap-wrapper/ChebiSoapGetOntologyChildren, http://s6.semanticscience.org:8080/lac/lac, http://sadi-service.semanticscience.org/PharmGKB-SADI-Wrapper/GetDrugAttributes, http://sadiframework.org/services/getDrugBankByUniProt, http://sadiframework.org/examples/blast/Triticum+turgidum, http://unbsj.biordf.net/FISHTOX-SADIServices/AGILocusCodeRecord2GO, http://s6.semanticscience.org:8080/wiepan/wiepan, http://sadi-service.semanticscience.org/sadi-rest-ncbi-eutils-pubmed/Getpublicationabstractfrompmid, http://unbsj.biordf.net/name-search-sadi/getSimilarDrugNames, http://s6.semanticscience.org:8080/sadi-rest-ncbi-eutils-gene/Getncbigeneorganismlineage, http://s5.semanticscience.org:8080/computesas/pnsa, http://dev.biordf.net/~kawas/cgi-bin/getKeggPathwaysByKeggDrug, http://s5.semanticscience.org:8080/computesas/ppsa2, http://cbakerlab.unbsj.ca/util-sadi-serv/pdf2ascii, http://sadi-service.semanticscience.org/sadi-ChEBI-soap-wrapper/ChebiSoapGetStatus, http://s5.semanticscience.org:8080/wiepan/wiepan, http://unbsj.biordf.net/FISHTOX-SADIServices/RefSeqNP2TAIR, http://s7.semanticscience.org/~ben/cgi-bin/Gramene/get_parent_features, http://sadi-service.semanticscience.org/PharmGKB-SADI-Wrapper/TestingVariants, http://unbsj.biordf.net/lipid-class-sadi/getLMLipidClassByLiProClass, http://unbsj.biordf.net/FISHTOX-SADIServices/NCBI_YP2Record, http://unbsj.biordf.net/FISHTOX-SADIServices/IntActProtein2ProteinInteraction, http://sadi-service.semanticscience.org/PharmGKB-SADI-Wrapper/GetPublicationRelatedDrugs, http://s6.semanticscience.org:8080/sadi-ChEBI-soap-wrapper/ChebiSoapGetSecondaryId, http://unbsj.biordf.net/name-search-sadi/getSimilarDiseaseNames, http://sadiframework.org/examples/blast/Plasmodium+falciparum, http://sadi-service.semanticscience.org/PharmGKB-SADI-Wrapper/GetGeneRelatedDrugs, http://unbsj.biordf.net/icd-sadi/getICD9IDByDiseaseClassURI, http://sadiframework.org/examples/uniprot2omim, http://unbsj.biordf.net/FISHTOX-SADIServices/RefSeqNM2TAIR, http://sadiframework.org/examples/blast/Giardia+intestinalis, http://s5.semanticscience.org:8080/computesas/fpsa2, http://sadiframework.org/examples/blast/Plasmodium+chabaudi, http://sadi-service.semanticscience.org/sadi-rest-ncbi-eutils-pubmed/Gettitlefrompmid, http://unbsj.biordf.net/FISHTOX-SADIServices/CowEBIUniProtRecord2GO, http://unbsj.biordf.net/FISHTOX-SADIServices/NCBI_YP2RNAService, http://s5.semanticscience.org:8080/computesas/rpc, http://s5.semanticscience.org:8080/molwt/molwt, http://sadiframework.org/examples/uniprotInfo, http://unbsj.biordf.net/FISHTOX-SADIServices/HumanEBIUniProtRecord2GO, http://sadi-service.semanticscience.org/PharmGKB-SADI-Wrapper/Getgenevariantfrequencies, http://s7.semanticscience.org/~ben/cgi-bin/CGD/get_child_features, http://sadi-service.semanticscience.org/sadi-rest-ncbi-eutils-pubmed/Getcopyrightinformation, http://sadiframework.org/services/getDrugNames, http://unbsj.biordf.net/temporal-reasoning-sadi/getTimeIntervalsOverlappingTimeInterval, http://sadiframework.org/services/opencitations/getCitingArticles, http://sadi-service.semanticscience.org/PharmGKB-SADI-Wrapper/GetGeneAlternateSymbols, http://sadiframework.org/examples/keggPathway2Compound, http://s6.semanticscience.org:8080/sadi-ChEBI-soap-wrapper/ChebiGetCitations, http://unbsj.biordf.net/mieo-sadi/getThreeLetterDenotationForSingularAminoAcidChange, http://s7.semanticscience.org/~ben/cgi-bin/ToxoDB/get_sequence_for_region, http://unbsj.biordf.net/omim-sadi/getOMIMIDByName, http://sadi-service.semanticscience.org/sadi-rest-ncbi-eutils-pubmed/Getlanguagefrompmid, http://s7.semanticscience.org/~ben/cgi-bin/ToxoDB/get_parent_features, http://sparql.tw.rpi.edu/services/datafaqs/faqt/internet-domain, http://unbsj.biordf.net/din-sadi/getDINByATCDrugClass, http://s5.semanticscience.org:8080/computesas/fpsa1, http://s6.semanticscience.org:8080/sadi-rest-ncbi-eutils-gene/Getncbigeneinfo, http://s6.semanticscience.org:8080/sadi-ChEBI-soap-wrapper/ChebiSoapGetOntologyChildren, http://sadiframework.org/examples/blast/Ovis+aries, http://sadi-service.semanticscience.org/PharmGKB-SADI-Wrapper/GetGeneRelatedPathways, http://sadiframework.org/services/getKEGGOrthologsByGene, http://unbsj.biordf.net/util-sadi-serv/getKeggPathwayByName, http://sadiframework.org/examples/blast/Equus+caballus, http://s5.semanticscience.org:8080/computesas/pnsa2, http://sadiframework.org/examples/blast/Triticum+aestivum, http://s7.semanticscience.org/~ben/cgi-bin/AmoebaDB/get_parent_features, http://unbsj.biordf.net/lipids-sadi/getLMLipidCategoryByLMLipidClass, http://s6.semanticscience.org:8080/sadi-rest-ncbi-eutils-gene/Getncbigeneencodingproteindescription, http://unbsj.biordf.net/FISHTOX-SADIServices/BLASTx2RefSeqProtein, http://s5.semanticscience.org:8080/xlogp/xlogp, http://unbsj.biordf.net/FISHTOX-SADIServices/NCBI_NM2ProteinService, http://unbsj.biordf.net/icd-sadi/getDiseaseClassByICD10CAID, http://sadiframework.org/services/getGeneByAllele.pl, http://unbsj.biordf.net/temporal-reasoning-sadi/getTimeIntervalsBeforeTimeInterval, http://s7.semanticscience.org/~ben/cgi-bin/CryptoDB/get_sequence_for_region, http://sadiframework.org/examples/blast/Caenorhabditis+briggsae, http://unbsj.biordf.net/FISHTOX-SADIServices/BLASTn2RefSeqRNA, http://dev.biordf.net/~kawas/cgi-bin/getDragonAlleleDescription, http://s5.semanticscience.org:8080/computesas/rnc, http://s5.semanticscience.org:8080/computesas/wpsa2, http://cbrass.biordf.net/sadi-examples/PressureInmmHg, http://dev.biordf.net/~kawas/cgi-bin/getPubmedIDsByKeggPathway, http://unbsj.biordf.net/util-sadi-serv/getPMIDByKeyPhrase, http://sadiframework.org/services/getCanadianSpeciesObservationsFromTaxonID, http://unbsj.biordf.net/lipids-sadi/getHMDBIDByLMID, http://dev.biordf.net/~kawas/cgi-bin/getCHEBIEntryFromKEGGCompound, http://s5.semanticscience.org:8080/computesas/lobmax, http://sadiframework.org/examples/blast/Drosophila+pseudoobscura, http://s6.semanticscience.org:8080/bondcount/bondcount, http://s6.semanticscience.org:8080/sadi-ChEBI-soap-wrapper/ChebiSoapGetInchi, http://unbsj.biordf.net/FISHTOX-SADIServices/RefSeqXR2MGI, http://s5.semanticscience.org:8080/computesas/fcomp, http://s6.semanticscience.org:8080/sadi-ChEBI-soap-wrapper/ChebiSoapGetFormulae, http://sadiframework.org/services/getRefSeqEntriesByKEGG, http://sadiframework.org/examples/blast/Brassica+napus, http://unbsj.biordf.net/FISHTOX-SADIServices/SGDRecord2GO, http://s5.semanticscience.org:8080/computesas/dpsa3, http://sparql.tw.rpi.edu/services/datafaqs/core/select-faqts/via-sparql-query, http://unbsj.biordf.net/ncbi-sadi/getNCBITaxonomyClassByID, http://sadi-service.semanticscience.org/PharmGKB-SADI-Wrapper/Getgenevarianttype, http://unbsj.biordf.net/mi-sadi/getProteinPropertyByType, http://unbsj.biordf.net/lipids-sadi/getLMSDRecordByCommonName, http://sadiframework.org/examples/blast/rat, http://unbsj.biordf.net/FISHTOX-SADIServices/NCBI_NM2Record, http://unbsj.biordf.net/pacs-sadi/getImageByPersonName, http://sadiframework.org/examples/blast/Leishmania+major, http://sadiframework.org/examples/blast/Caenorhabditis+elegans, http://unbsj.biordf.net/FISHTOX-SADIServices/NCBI_NS2SequenceService, http://s5.semanticscience.org:8080/computesas/cwppsa, http://sadiframework.org/examples/blast/Schizosaccharomyces+pombe, http://sadi-service.semanticscience.org/sadi-ChEBI-soap-wrapper/ChebiSoapGetCitations, http://unbsj.biordf.net/FISHTOX-SADIServices/NCBI_NW2SequenceService, http://sadiframework.org/services/opencitations/getAbstract, http://unbsj.biordf.net/lipids-sadi/getLMIDByPubChemSubstanceID, http://s6.semanticscience.org:8080/sadi-ChEBI-soap-wrapper/ChebiSoapGetEntityStar, http://sadiframework.org/examples/blast/Saccoglossus+kowalevskii, http://s5.semanticscience.org:8080/computesas/wnsa3, http://sparql.tw.rpi.edu/services/datafaqs/faqt/redirect-loop, http://sadiframework.org/examples/blast/Manihot+esculenta, http://unbsj.biordf.net/temporal-reasoning-sadi/getTimeIntervalsStartedByTimeInterval, http://s6.semanticscience.org:8080/sadi-ChEBI-soap-wrapper/ChebiSoapGetChemicalStructures, http://unbsj.biordf.net/FISHTOX-SADIServices/NCBI_NP2Record, http://sadiframework.org/examples/blast/Oryza+sativa, http://s6.semanticscience.org:8080/aromaticatomcount/aromaticatomcount, http://sadi-service.semanticscience.org/sadi-ChEBI-soap-wrapper/ChebiSoapGetDatabaseLinks, http://dev.biordf.net/~kawas/cgi-bin/getEnzymeGeneComponentParts, http://s6.semanticscience.org:8080/tpsa/tpsa, http://sadiframework.org/examples/blast/Ciona+intestinalis, http://s7.semanticscience.org/~ben/cgi-bin/TriTrypDB/get_child_features, http://sadiframework.org/examples/blast/Beta+vulgaris, http://s6.semanticscience.org:8080/sadi-soap-vrnafold-distance/Vrnafolddistancecalculator, http://dev.biordf.net/~kawas/cgi-bin/kegg2prosite, http://unbsj.biordf.net/din-sadi/getDrugProductNameByDINDrugProduct, http://cbakerlab.unbsj.ca/util-sadi-serv/getHTMLByPMCID, http://unbsj.biordf.net/mieo-sadi/getSingularAminoAcidChangeByOneLetterDenotation, http://unbsj.biordf.net/mi-sadi/visualiseMutationSeries, http://sadiframework.org/examples/blast/Sorghum+bicolor, http://sadiframework.org/services/getAllelesByGene.pl, http://unbsj.biordf.net/FISHTOX-SADIServices/SpeciesName2AEExperimentalRecord, http://sadiframework.org/examples/keggGene2GeneXrefs, http://sadiframework.org/examples/uniprot2prosite, http://unbsj.biordf.net/FISHTOX-SADIServices/RefSeqXP2ZFIN, http://unbsj.biordf.net/FISHTOX-SADIServices/NCBI_NP2SequenceService, http://unbsj.biordf.net/lipids-sadi/getLMSDRecordByLMLipidClass, http://unbsj.biordf.net/uniprot-sadi/getUniProtIDByRefSeqNPAccession, http://unbsj.biordf.net/FISHTOX-SADIServices/RefSeqXP2TAIR, http://unbsj.biordf.net/din-sadi/getDrugProductByDIN, http://unbsj.biordf.net/FISHTOX-SADIServices/ZFIN2RefSeqRNA, http://sadi-service.semanticscience.org/sadi-rest-ncbi-eutils-taxonomy/Taxid2genbankcommonname, http://unbsj.biordf.net/util-sadi-serv/getPDFByPMID, http://dev.biordf.net/~kawas/cgi-bin/getEcGeneComponentPartsHuman, http://unbsj.biordf.net/temporal-reasoning-sadi/getDurationOfTimeInterval, http://unbsj.biordf.net/din-sadi/getMonographByDINDrugProduct, http://dev.biordf.net/~kawas/cgi-bin/getUniprotByKeggGene, http://unbsj.biordf.net/util-sadi-serv/getUniProtIdByProteinName, http://s7.semanticscience.org/~ben/cgi-bin/CGD/get_sequence_for_region, http://sadi-service.semanticscience.org/PharmGKB-SADI-Wrapper/GetDrugVaClassification, http://unbsj.biordf.net/temporal-reasoning-sadi/getTimeIntervalsFinishedByTimeInterval, http://unbsj.biordf.net/lipids-sadi/getLMIDByKEGGCompoundID, http://cbakerlab.unbsj.ca/util-sadi-serv/getPMCIDByPMID, http://s7.semanticscience.org/~ben/cgi-bin/PlasmoDB/get_features_overlapping_region, http://sadiframework.org/services/opencitations/getAbstract, http://sadi-service.semanticscience.org/sadi-ChEBI-soap-wrapper/ChebiSoapGetEntityStar, http://sparql.tw.rpi.edu/services/datafaqs/faqt/predicate-counter, http://sadi-service.semanticscience.org/PharmGKB-SADI-Wrapper/Getgenevariantpharmgkbid, http://sadi-service.semanticscience.org/sadi-ChEBI-soap-wrapper/ChebiSoapGetInchi, http://sadiframework.org/examples/hello-param, http://unbsj.biordf.net/FISHTOX-SADIServices/HMMR3PFamA, http://unbsj.biordf.net/FISHTOX-SADIServices/RefSeqNG2MGI, http://sadiframework.org/examples/blast/Eimeria+maxima, http://s7.semanticscience.org/~ben/cgi-bin/TriTrypDB/get_features_overlapping_region, http://s7.semanticscience.org/~ben/cgi-bin/VectorBase/get_sequence_for_region, http://s5.semanticscience.org:8080/alogp/alogp, http://unbsj.biordf.net/util-sadi-serv/getPMIDByPMCID, http://unbsj.biordf.net/FISHTOX-SADIServices/ZFIN2RefSeqDNA, http://sadiframework.org/examples/keggGene2Pathway, http://sadiframework.org/services/getMolecularInteractions, http://unbsj.biordf.net/lipids-sadi/getProteinRelatedToLMLipidCategory, http://s6.semanticscience.org:8080/sadi-ChEBI-soap-wrapper/ChebiSoapGetMass, http://unbsj.biordf.net/FISHTOX-SADIServices/NCBI_NG2SequenceService, http://sadiframework.org/examples/blast/Theobroma+cacao, http://sadiframework.org/examples/blast/Medicago+sativa, http://sadi-service.semanticscience.org/sadi-rest-ncbi-eutils-pubmed/Getauthorsfrompmid, http://sadiframework.org/examples/blast/Felis+catus, http://unbsj.biordf.net/ec-sadi/getEnzymeClassByName, http://cbakerlab.unbsj.ca/util-sadi-serv/getPDFByPMCID, http://sadi-service.semanticscience.org/PharmGKB-SADI-Wrapper/Getgenevariantpreflanksequence, http://unbsj.biordf.net/uniprot-sadi/getUniProtIDByEC, http://sadiframework.org/services/opencitations/getDocumentInfo, http://unbsj.biordf.net/mieo-sadi/getSingularAminoAcidChangeByThreeLetterDenotation, http://unbsj.biordf.net/pdb-sadi/blastPDB, http://sadiframework.org/examples/blast/Pan+troglodytes, http://unbsj.biordf.net/FISHTOX-SADIServices/UniProtRecord2IntAct, http://sadiframework.org/examples/blast/Brassica+juncea, http://sadiframework.org/examples/blast/Tribolium+castaneum, http://unbsj.biordf.net/FISHTOX-SADIServices/Feature2Sequence, http://s6.semanticscience.org:8080/sadi-ChEBI-soap-wrapper/ChebiSoapGetCitations, http://s7.semanticscience.org/~ben/cgi-bin/SGD/get_features_overlapping_region, http://unbsj.biordf.net/FISHTOX-SADIServices/NCBI_NR2SequenceService, http://s5.semanticscience.org:8080/computesas/pjn, http://unbsj.biordf.net/lipids-sadi/getLMSDRecordByLipidMass, http://sadiframework.org/examples/linear-async, http://s7.semanticscience.org/~ben/cgi-bin/TriTrypDB/get_feature_info, http://s6.semanticscience.org:8080/sadi-soap-vrnafold/ViennaRNAFold, http://sadiframework.org/services/opencitations/getCitedArticles, http://unbsj.biordf.net/FISHTOX-SADIServices/RefSeqNM2ZFIN, http://unbsj.biordf.net/FISHTOX-SADIServices/RefSeqZP2ZFIN, http://unbsj.biordf.net/FISHTOX-SADIServices/NCBI_NP2RNAService, http://unbsj.biordf.net/util-sadi-serv/pdf2ascii, http://unbsj.biordf.net/FISHTOX-SADIServices/DNA2RNATranscriber, http://unbsj.biordf.net/hmdb-sadi/getOMIMIDByHMDBID, http://sadiframework.org/examples/blast/Hordeum+bulbosum, http://unbsj.biordf.net/temporal-reasoning-sadi/getTimeIntervalBetween, http://unbsj.biordf.net/atc-sadi/getSubclassByATCDrugClass, http://sadiframework.org/examples/blast/Eremothecium+gossypii, http://sadiframework.org/examples/blast/Hordeum+vulgare, http://sadiframework.org/examples/uniprot2pubmed, http://sadi-service.semanticscience.org/sadi-ChEBI-soap-wrapper/ChebiSoapGetSecondaryId, http://unbsj.biordf.net/ec-sadi/getECIDByEnzymeClassURI, http://s6.semanticscience.org:8080/sadi-ChEBI-soap-wrapper/ChebiSoapGetIupacName, http://sadiframework.org/examples/pubmed2uniprot, http://unbsj.biordf.net/uniprot-sadi/getUniProtIDByProteinName, http://unbsj.biordf.net/hmdb-sadi/getHMDBIDBySMPDBID, http://sadiframework.org/examples/uniprot2EntrezGene, http://unbsj.biordf.net/FISHTOX-SADIServices/RefSeqNR2ZFIN, http://s6.semanticscience.org:8080/sadi-rest-ncbi-eutils-gene/Getncbigeneorganismcommonname, http://s5.semanticscience.org:8080/inchi2smiles/inchi2smiles, http://sadiframework.org/examples/blast/Canis+lupus+familiaris, http://unbsj.biordf.net/FISHTOX-SADIServices/NCBI_AC2SequenceService, http://unbsj.biordf.net/FISHTOX-SADIServices/RefSeqNM2MGI, http://unbsj.biordf.net/util-sadi-serv/getGOTermByName, http://s5.semanticscience.org:8080/computesas/fpsa3, http://s6.semanticscience.org:8080/sadi-rest-ncbi-eutils-gene/Getncbigenelocation2, http://sadiframework.org/services/getKEGGPathwayDiagram, http://sadi-service.semanticscience.org/PharmGKB-SADI-Wrapper/GetGeneRelatedEntities, http://unbsj.biordf.net/temporal-reasoning-sadi/getTimeIntervalsOverlappedByTimeInterval, http://unbsj.biordf.net/uniprot-sadi/getPMIDByUniProtID, http://unbsj.biordf.net/util-sadi-serv/getHTMLByPMCID, http://unbsj.biordf.net/FISHTOX-SADIServices/NCBI_NM2SequenceService, http://s6.semanticscience.org:8080/sadi-ChEBI-soap-wrapper/ChebiSoapGetComments, http://unbsj.biordf.net/din-sadi/getAHFSDrugClassByDINDrugProduct, http://s7.semanticscience.org/~ben/cgi-bin/FlyBase/get_sequence_for_region, http://unbsj.biordf.net/icd-sadi/getICD9DiseaseClassByName, http://s5.semanticscience.org:8080/computesas/cwpnsa, http://unbsj.biordf.net/units-sadi/convertToKilograms, http://unbsj.biordf.net/FISHTOX-SADIServices/NCBI_XP2Record, http://s7.semanticscience.org/~ben/cgi-bin/ToxoDB/get_child_features, http://sadi-service.semanticscience.org/sadi-ChEBI-soap-wrapper/ChebiSoapGetDefinition, http://s7.semanticscience.org/~ben/cgi-bin/CGD/get_parent_features, http://sadiframework.org/examples/blast/Trypanosoma+brucei, http://unbsj.biordf.net/kegg-sadi/getATCClassByKEGGDRUGID, http://unbsj.biordf.net/hmdb-sadi/getHMDBIDByKEGGPATHWAYID, http://s7.semanticscience.org/~ben/cgi-bin/FlyBase/get_features_overlapping_region, http://sadiframework.org/examples/blast/Glycine+max, http://sadiframework.org/examples/blast/Tetrahymena+thermophila, http://sadiframework.org/examples/uniprot2go, http://unbsj.biordf.net/icd-sadi/getICD10CAIDByDiseaseClassURI, http://sadiframework.org/examples/blast/Arabidopsis+thaliana, http://sadiframework.org/examples/blast/Meleagris+gallopavo, http://sadiframework.org/examples/blast/Oreochromis+niloticus, http://unbsj.biordf.net/lipids-sadi/getLMSDRecordBySystematicName, http://sadiframework.org/examples/blast/Kluyveromyces+lactis, http://s5.semanticscience.org:8080/computesas/rpcsa, http://unbsj.biordf.net/temporal-reasoning-sadi/getTimeIntervalsDuringTimeInterval, http://sadi-service.semanticscience.org/PharmGKB-SADI-Wrapper/Getgenevariantgenotypingexperiment, http://sadi-service.semanticscience.org/PharmGKB-SADI-Wrapper/GetGeneAlternateNames, http://sadi-service.semanticscience.org/PharmGKB-SADI-Wrapper/GetPublicationRelatedDiseases, http://unbsj.biordf.net/util-sadi-serv/getGIByUniProtID, http://sadiframework.org/examples/blast/mouse, http://unbsj.biordf.net/FISHTOX-SADIServices/ORFPredictor, http://sadi-service.semanticscience.org/PharmGKB-SADI-Wrapper/GetGeneVariantsBySymbol, http://dev.biordf.net/~kawas/cgi-bin/getEnzymeGeneComponentPartsHuman, http://unbsj.biordf.net/hmdb-sadi/getPMIDByHMDBID, http://unbsj.biordf.net/FISHTOX-SADIServices/RefSeqZP2TAIR, http://unbsj.biordf.net/FISHTOX-SADIServices/ZFINRecord2GO, http://unbsj.biordf.net/uniprot-sadi/getRefSeqNPAccessionByUniProtID, http://s7.semanticscience.org/~ben/cgi-bin/AmoebaDB/get_sequence_for_region, http://s6.semanticscience.org:8080/sadi-owlimqueryer/Owlimqueryer, http://dev.biordf.net/~kawas/cgi-bin/getEnzymeGeneComponentPartsMouse, http://s5.semanticscience.org:8080/computesas/vamd, http://sadi-service.semanticscience.org/sadi-AptamerBase-REST-Wrapper/Aptamerbasegetaptamerwithsequencefromid, http://sadiframework.org/examples/blast/Ustilago+maydis, http://s7.semanticscience.org/~ben/cgi-bin/ToxoDB/get_features_overlapping_region, http://s6.semanticscience.org:8080/sadi-ChEBI-soap-wrapper/ChebiSoapGetRegistryNumbers, http://unbsj.biordf.net/FISHTOX-SADIServices/NCBI_AP2SequenceService, http://sadiframework.org/examples/blastUniprotById, http://unbsj.biordf.net/lipid-class-sadi/mineTextForLipidInfo, http://sparql.tw.rpi.edu/services/datafaqs/core/select-faqts/identity, http://unbsj.biordf.net/units-sadi/convertToGrams, http://sadiframework.org/examples/blast/Physcomitrella+patens, http://sadiframework.org/examples/calculateBMI, http://unbsj.biordf.net/FISHTOX-SADIServices/UniProtRecord2GO, http://sadiframework.org/examples/blast/Scheffersomyces+stipitis, http://sadiframework.org/examples/entrezGene2Kegg, http://s6.semanticscience.org:8080/sadi-ChEBI-soap-wrapper/ChebiSoapGetChebiAsciiName, http://sadi-service.semanticscience.org/sadi-rest-ncbi-eutils-taxonomy/Gettaxidrank, http://s5.semanticscience.org:8080/computesas/eccen, http://sadi-service.semanticscience.org/sadi-rest-ncbi-eutils-taxonomy/Taxid2commonname, http://sadiframework.org/examples/blast/Brassica+rapa, http://sadiframework.org/examples/blast/Plasmodium+berghei, http://sadiframework.org/examples/blast/Bos+taurus, http://dev.biordf.net/~kawas/cgi-bin/getKeggPathwaysByEnzyme, http://sparql.tw.rpi.edu/services/datafaqs/faqt/void-properties, http://s5.semanticscience.org:8080/computesas/fnsa1, http://sadi-service.semanticscience.org/sadi-rest-ncbi-eutils-taxonomy/Ncbieutilstaxonomy, http://sadiframework.org/examples/pubmed2uniprot, http://s6.semanticscience.org:8080/sadi-rest-ncbi-eutils-gene/Getncbigenealternatesymbols, http://unbsj.biordf.net/FISHTOX-SADIServices/NCBI_XP2SequenceService, http://unbsj.biordf.net/FISHTOX-SADIServices/AGILocusCodeRecord2Sequence, http://sadiframework.org/services/getAlleleDescription.pl, http://sadi-service.semanticscience.org/PharmGKB-SADI-Wrapper/GetDiseaseAttributes, http://s7.semanticscience.org/~ben/cgi-bin/CGD/get_feature_info, http://sadiframework.org/examples/blast/Setaria+italica, http://s7.semanticscience.org/~ben/cgi-bin/Gramene/get_feature_info, http://sadiframework.org/examples/blast/Arabidopsis+lyrata, http://dev.biordf.net/~kawas/cgi-bin/getEnzymesEncodedByKeggGenes, http://sadiframework.org/examples/blast/Gibberella+zeae, http://sadi-service.semanticscience.org/sadi-ChEBI-soap-wrapper/ChebiSoapGetSmiles, http://unbsj.biordf.net/lipids-sadi/getKEGGCompoundIDByLMID, http://sadi-service.semanticscience.org/sadi-AptamerBase-REST-Wrapper/Aptamerbasegetaptamerwithsequence, http://unbsj.biordf.net/FISHTOX-SADIServices/RefSeqXM2UniProt, http://s7.semanticscience.org/~ben/cgi-bin/AmoebaDB/get_feature_info, http://sadiframework.org/examples/blast/Lotus+japonicus, http://sadiframework.org/examples/uniprot2pdb, http://sadiframework.org/examples/blast/Sus+scrofa, http://s6.semanticscience.org:8080/sadi-rest-ncbi-eutils-gene/Getncbigeneencodingproteinname, http://unbsj.biordf.net/lipid-ref-sadi/getPublicationByLiProClass, http://sadi-service.semanticscience.org/PharmGKB-SADI-Wrapper/GetDiseaseName, http://unbsj.biordf.net/kegg-sadi/getKEGGDRUGIDByATCClass, http://cbakerlab.unbsj.ca/lipids-sadi/getLMSDRecordByLMID, http://sadiframework.org/examples/blast/Amphimedon+queenslandica, http://sadiframework.org/examples/blast/Dictyostelium+discoideum, http://unbsj.biordf.net/lipids-sadi/getLMSDRecordByFormula, http://s7.semanticscience.org/~ben/cgi-bin/PlasmoDB/get_feature_info, http://sparql.tw.rpi.edu/services/datafaqs/core/select-datasets/by-ckan-group, http://unbsj.biordf.net/FISHTOX-SADIServices/NCBI_XM2Record, http://unbsj.biordf.net/ec-sadi/getSubclassByEnzymeClass, http://unbsj.biordf.net/FISHTOX-SADIServices/NCBI_XM2SequenceService, http://sadi-service.semanticscience.org/PharmGKB-SADI-Wrapper/Getgenevariantsnptype, http://sadiframework.org/examples/blast/Solanum+lycopersicoides, http://unbsj.biordf.net/mi-sadi/getMutationByMutantProtein, http://s5.semanticscience.org:8080/computesas/fnsa2, http://s7.semanticscience.org/~ben/cgi-bin/FlyBase/get_child_features, http://s5.semanticscience.org:8080/computesas/dpsa1, http://sadiframework.org/examples/blast/Cryptosporidium+hominis, http://unbsj.biordf.net/FISHTOX-SADIServices/EnrichmentService, http://s7.semanticscience.org/~ben/cgi-bin/CryptoDB/get_parent_features, http://unbsj.biordf.net/FISHTOX-SADIServices/NCBI_XM2ProteinService, http://unbsj.biordf.net/temporal-reasoning-sadi/getTimeIntervalsStartingTimeInterval, http://cbrass.biordf.net/sadi-examples/calcBMIX, http://unbsj.biordf.net/FISHTOX-SADIServices/RefSeqAP2ZFIN, http://sadi-service.semanticscience.org/PharmGKB-SADI-Wrapper/GetDiseaseGenericNames, http://s6.semanticscience.org:8080/sadi-rest-ncbi-eutils-gene/Getncbigenexrefs, http://sadi-service.semanticscience.org/PharmGKB-SADI-Wrapper/GetGeneSymbol, http://unbsj.biordf.net/icd-sadi/getSubclassByICD10CADiseaseClass, http://sadiframework.org/services/getKEGGCompoundsByPathway, http://sadiframework.org/examples/blast/Solanum+melongena, http://dev.biordf.net/~kawas/cgi-bin/getGOTermByGeneID, http://dev.biordf.net/~kawas/cgi-bin/getdbSNPRecordByUniprotID, http://sadiframework.org/examples/blast/Populus+trichocarpa, http://sadiframework.org/services/DragonServices/getDragonSimpleAnnotatedImages, http://unbsj.biordf.net/FISHTOX-SADIServices/RefSeqXM2TAIR, http://sadiframework.org/services/opencitations/getDocumentInfo, http://unbsj.biordf.net/FISHTOX-SADIServices/NCBI_XR2SequenceService, http://unbsj.biordf.net/name-search-sadi/getSimilarATCDrugClassNames, http://sadiframework.org/examples/blast/Lolium+perenne, http://sadiframework.org/examples/blast/Medicago+truncatula, http://sadiframework.org/examples/blast/Brassica+nigra, http://sadiframework.org/examples/hello, http://s6.semanticscience.org:8080/wiponu/wiponu, http://unbsj.biordf.net/din-sadi/getATCDrugClassByDINDrugProduct, http://s5.semanticscience.org:8080/computesas/fnsa3, http://unbsj.biordf.net/FISHTOX-SADIServices/RefSeqXP2UniProt, http://sadiframework.org/examples/blast/Cryptococcus+neoformans, http://sadiframework.org/examples/blast/Ornithorhynchus+anatinus, http://s6.semanticscience.org:8080/sadi-rest-ncbi-eutils-gene/Getncbigenename, http://sadiframework.org/examples/blast/Vitis+vinifera, http://sadiframework.org/examples/blast/Aegilops+tauschii, http://unbsj.biordf.net/lipids-sadi/getPubChemSubstanceIDByLMID, http://sadiframework.org/services/renderProteinStructure, http://s7.semanticscience.org/~ben/cgi-bin/Gramene/get_child_features, http://sadiframework.org/examples/blast/Theileria+parva, http://dev.biordf.net/~kawas/cgi-bin/getEcGeneComponentPartsRat, http://s5.semanticscience.org:8080/zindex/zindex, http://sadiframework.org/examples/blast/Monodelphis+domestica, http://unbsj.biordf.net/uniprot-sadi/getUniProtIDByPMID, http://sadi-service.semanticscience.org/sadi-ChEBI-soap-wrapper/ChebiSoapGetRegistryNumbers, http://sadiframework.org/examples/uniprot2kegg, http://sadiframework.org/examples/blast/Neurospora+crassa, http://sadiframework.org/examples/blast/Hydra+magnipapillata, http://s5.semanticscience.org:8080/computesas/pjtsis, http://unbsj.biordf.net/units-sadi/convertToMeters, http://cbrass.biordf.net/sadi-examples-cardio/patientrecord, http://sadiframework.org/examples/blast/Acyrthosiphon+pisum, http://s6.semanticscience.org:8080/sadi-rest-ncbi-eutils-gene/Getncbigeneorganismtaxname, http://sadiframework.org/examples/blast/Taeniopygia+guttata, http://s5.semanticscience.org:8080/computesas/wpsa1, http://sadi-service.semanticscience.org/PharmGKB-SADI-Wrapper/GetGeneRelatedDiseases, http://sadiframework.org/examples/blast/Strongylocentrotus+purpuratus, http://unbsj.biordf.net/FISHTOX-SADIServices/LocusHistoryService, http://dev.biordf.net/~kawas/cgi-bin/getDragonAlleleLocus, http://unbsj.biordf.net/FISHTOX-SADIServices/RefSeqXR2ZFIN, http://sadiframework.org/examples/blast/Brassica+oleracea, http://unbsj.biordf.net/util-sadi-serv/getWikipediaPageByTopic, http://s6.semanticscience.org:8080/sadi-ChEBI-soap-wrapper/ChebiSoapGetMolecularEntityWithIdentifier, http://sadiframework.org/examples/blast/Ailuropoda+melanoleuca, http://sadi-service.semanticscience.org/sadi-ChEBI-soap-wrapper/ChebiSoapGetInchiKey, http://s7.semanticscience.org/~ben/cgi-bin/FlyBase/get_parent_features, http://sadi-service.semanticscience.org/PharmGKB-SADI-Wrapper/GetDrugGenericNames, http://unbsj.biordf.net/FISHTOX-SADIServices/RefSeqNR2MGI, http://s6.semanticscience.org:8080/sadi-rest-ncbi-eutils-gene/Getncbigenesymbol, http://sadi-service.semanticscience.org/PharmGKB-SADI-Wrapper/GetGeneName, http://unbsj.biordf.net/lipids-sadi/getLMIDByCHEBIID, http://s5.semanticscience.org:8080/computesas/thsa, http://unbsj.biordf.net/name-search-sadi/getSimilarOrganismNames, http://sadiframework.org/examples/blast/Guillardia+theta, http://sadiframework.org/examples/blast/Plasmodium+yoelii, http://sadi-service.semanticscience.org/sadi-rest-ncbi-eutils-pubmed/Getstatusfrompmid, http://s5.semanticscience.org:8080/computesas/ip, http://unbsj.biordf.net/mi-sadi/getMutationByImpact, http://sparql.tw.rpi.edu/services/datafaqs/faqt/access/in-sparql-endpoint, http://sadiframework.org/services/getDragonSequenceLocus.pl, http://unbsj.biordf.net/atc-sadi/getDrugClassByATCID, http://dev.biordf.net/~markw/cgi-bin/services/DragonDB_Blast.pl, http://unbsj.biordf.net/uniprot-sadi/getProteinNameByUniProtID, http://sadiframework.org/examples/blast/Nomascus+leucogenys, http://sadiframework.org/examples/blast/Anolis+carolinensis, http://dev.biordf.net/~kawas/cgi-bin/getEcEncodedByKeggGenes, http://sadiframework.org/examples/blast/Xenopus+(Silurana)+tropicalis, http://s6.semanticscience.org:8080/sadi-rest-ncbi-eutils-gene/Getncbigenepublications, http://sadiframework.org/examples/blast/Aegilops+umbellulata, http://unbsj.biordf.net/lipids-sadi/getLMLipidClassById, http://unbsj.biordf.net/util-sadi-serv/getPMCIDByPMID, http://dev.biordf.net/~kawas/cgi-bin/getDragonLocusAlleles, http://unbsj.biordf.net/atc-sadi/getATCDrugClassByName, http://unbsj.biordf.net/mieo-sadi/getOneLetterDenotationForSingularAminoAcidChange, http://sadi-service.semanticscience.org/sadi-rest-ncbi-eutils-taxonomy/Taxid2synonym, http://unbsj.biordf.net/mi-sadi/visualiseMutationSeriesWithHomologyModeling, http://s7.semanticscience.org/~ben/cgi-bin/AmoebaDB/get_features_overlapping_region, http://unbsj.biordf.net/FISHTOX-SADIServices/NCBI_ZP2Record, http://s7.semanticscience.org/~ben/cgi-bin/TriTrypDB/get_sequence_for_region, http://unbsj.biordf.net/FISHTOX-SADIServices/RefSeqNC2MGI, http://sadi-service.semanticscience.org/sadi-rest-ncbi-eutils-pubmed/Getmedlinejournalcitationfrompmid, http://sparql.tw.rpi.edu/services/datafaqs/core/augment-datasets/with-preferred-uri-and-ckan-meta-void, http://dev.biordf.net/~kawas/cgi-bin/getEcGeneComponentPartsMouse, http://cbakerlab.unbsj.ca/lipids-sadi/getLMSDRecordBySystematicName, http://s5.semanticscience.org:8080/computesas/wnsa2, http://s7.semanticscience.org/~ben/cgi-bin/PlasmoDB/get_child_features, http://sadiframework.org/examples/y4x, http://unbsj.biordf.net/FISHTOX-SADIServices/AEExperiment2Info, http://s6.semanticscience.org:8080/sadi-ChEBI-soap-wrapper/ChebiSoapGetSmiles, http://sadi-service.semanticscience.org/sadi-rest-ncbi-eutils-pubmed/Getdatecreatedfrompmid, http://sadiframework.org/services/soroush/PressureConvertor, http://s5.semanticscience.org:8080/computesas/rhsa, http://s7.semanticscience.org/~ben/cgi-bin/SGD/get_parent_features, http://s7.semanticscience.org/~ben/cgi-bin/Gramene/get_sequence_for_region, http://s7.semanticscience.org/~ben/cgi-bin/FlyBase/get_feature_info, http://dev.biordf.net/~kawas/cgi-bin/getEnzymeGeneComponentPartsRat, http://unbsj.biordf.net/FISHTOX-SADIServices/NCBI_YP2SequenceService, http://sadiframework.org/examples/blast/Avena+sativa, http://sadiframework.org/examples/blast/Phaseolus+vulgaris, http://sparql.tw.rpi.edu/services/datafaqs/faqt/discuss/contributor-email, http://s7.semanticscience.org/~ben/cgi-bin/AmoebaDB/get_child_features, http://unbsj.biordf.net/FISHTOX-SADIServices/RefSeqNM2UniProt, http://unbsj.biordf.net/mieo-sadi/getHGVSDenotationForSingularAminoAcidChange, http://unbsj.biordf.net/hmdb-sadi/getHMDBIDByPMID, http://sadiframework.org/examples/blast/Cricetulus+griseus, http://sadi-service.semanticscience.org/PharmGKB-SADI-Wrapper/GetDiseaseRelatedPhenotypes, http://unbsj.biordf.net/lipids-sadi/getCHEBIIDByLMID, http://unbsj.biordf.net/mi-sadi/getMutationImpactByProteinProperty, http://sadiframework.org/examples/blast/Danio+rerio, http://s6.semanticscience.org:8080/sadi-ChEBI-soap-wrapper/ChebiSoapGetInchiKey, http://unbsj.biordf.net/mi-sadi/getMutationSubseries, http://sparql.tw.rpi.edu/services/datafaqs/faqt/sparql-service-description/named-graphs, http://sadiframework.org/examples/blast/Bombus+terrestris, http://sadi-service.semanticscience.org/PharmGKB-SADI-Wrapper/GetDrugStructure, http://sadiframework.org/examples/blast/Solanum+peruvianum, http://sadi-service.semanticscience.org/PharmGKB-SADI-Wrapper/GetDiseaseRelatedGenes, http://sadiframework.org/services/getKEGGParalogsByGene, http://sadiframework.org/services/getKEGGIDFromUniProt, http://sadiframework.org/services/HelloWorld, http://unbsj.biordf.net/FISHTOX-SADIServices/AERecord2Microarray, http://training.biordf.net/luke-sadi-services/Calculate+BMI, http://sadi-service.semanticscience.org/sadi-rest-ncbi-eutils-pubmed/Getarticleissnfrompmid, http://dev.biordf.net/~kawas/cgi-bin/getGOTermDefinitions, http://cbakerlab.unbsj.ca/lipids-sadi/getLMSDRecordByLipidMass, http://sadiframework.org/examples/pdb2uniprot, http://sadiframework.org/examples/blast/Hemiselmis+andersenii, http://sadi-service.semanticscience.org/PharmGKB-SADI-Wrapper/GetGeneAttributes, http://dev.biordf.net/~kawas/cgi-bin/kegg2pfam, http://unbsj.biordf.net/FISHTOX-SADIServices/RefSeqNP2ZFIN, http://s5.semanticscience.org:8080/computesas/lobmin, http://sadiframework.org/examples/blast/Anopheles+gambiae, http://s7.semanticscience.org/~ben/cgi-bin/ToxoDB/get_feature_info, http://dev.biordf.net/~kawas/cgi-bin/getKeggPathwaysByEC, http://sadiframework.org/examples/blast/Capsicum+annuum, http://unbsj.biordf.net/FISHTOX-SADIServices/RefSeqZP2UniProt, http://sadi-service.semanticscience.org/sadi-rest-ncbi-eutils-taxonomy/Getparenttaxidfromtaxid, http://s7.semanticscience.org/~ben/cgi-bin/PlasmoDB/get_parent_features, http://s6.semanticscience.org:8080/sadi-soap-vrnafold-heat/Vrnaheatcalculator, http://sadiframework.org/examples/blast/Magnaporthe+oryzae, http://sparql.tw.rpi.edu/services/datafaqs/faqt/lodcloud/max-1-topic-tag, http://unbsj.biordf.net/util-sadi-serv/getKeggDrugByName, http://unbsj.biordf.net/lipids-sadi/getLMIDByHMDBID, http://sadi-service.semanticscience.org/PharmGKB-SADI-Wrapper/GetDiseaseRelatedEntities, http://unbsj.biordf.net/FISHTOX-SADIServices/MGIRecord2GO, http://sadiframework.org/examples/blast/Pongo+abelii, http://sadiframework.org/examples/blast/Apis+mellifera, http://sadiframework.org/examples/blast/Leishmania+infantum, http://unbsj.biordf.net/atc-sadi/getATCIDByDrugClassURI, http://sadiframework.org/examples/blast/Candida+glabrata, http://sadiframework.org/examples/keggPathway2Gene, http://sadi-service.semanticscience.org/PharmGKB-SADI-Wrapper/GetDiseaseAlternateNames, http://s7.semanticscience.org/~ben/cgi-bin/Gramene/get_features_overlapping_region, http://sadiframework.org/examples/blast/Macaca+mulatta, http://sadi-service.semanticscience.org/sadi-AptamerBase-REST-Wrapper/Aptamerbasegetaptamerwithsequencefromname, http://unbsj.biordf.net/FISHTOX-SADIServices/NCBI_ZP2RNAService, http://unbsj.biordf.net/FISHTOX-SADIServices/NCBI_NZ2SequenceService, http://sadiframework.org/services/getEntrezGeneIDsFromRefSeqTranscripts, http://sadiframework.org/examples/blast/Callithrix+jacchus, http://s5.semanticscience.org:8080/computesas/dpsa2, http://s7.semanticscience.org/~ben/cgi-bin/SGD/get_sequence_for_region, http://unbsj.biordf.net/temporal-reasoning-sadi/getTimeIntervalsMeetingTimeInterval, http://unbsj.biordf.net/FISHTOX-SADIServices/NCBI_ZP2SequenceService, http://sadi-service.semanticscience.org/PharmGKB-SADI-Wrapper/Getgenevariantstrandsense, http://sadi-service.semanticscience.org/sadi-ChEBI-soap-wrapper/ChebiSoapGetFormulae, http://unbsj.biordf.net/util-sadi-serv/getDOIDTermByName, http://sadi-service.semanticscience.org/sadi-ChEBI-soap-wrapper/ChebiSoapGetSynonym, http://dev.biordf.net/~kawas/cgi-bin/getGeneInformation, http://sadiframework.org/examples/blast/Cavia+porcellus, http://s6.semanticscience.org:8080/sadi-ChEBI-soap-wrapper/ChebiSoapGetOntologyParents, http://s5.semanticscience.org:8080/computesas/wnsa1, http://sadiframework.org/examples/blast/Eimeria+tenella, http://unbsj.biordf.net/icd-sadi/getICD10CADiseaseClassByName, http://unbsj.biordf.net/FISHTOX-SADIServices/InterProScan2GO, http://unbsj.biordf.net/temporal-reasoning-sadi/getTimeIntervalsMetByTimeInterval, http://unbsj.biordf.net/uniprot-sadi/getECByUniProtID, http://s5.semanticscience.org:8080/apol/apol, http://s6.semanticscience.org:8080/sadi-ChEBI-soap-wrapper/ChebiSoapGetDefinition, http://unbsj.biordf.net/din-sadi/getDINDrugProductByDrugProductName, http://s7.semanticscience.org/~ben/cgi-bin/TriTrypDB/get_parent_features, http://unbsj.biordf.net/FISHTOX-SADIServices/WBRecord2GO, http://unbsj.biordf.net/FISHTOX-SADIServices/NCBI_NT2SequenceService, http://sadiframework.org/examples/blast/Solanum+lycopersicum, http://unbsj.biordf.net/temporal-reasoning-sadi/getTimeIntervalsContainingTimeInterval, http://s5.semanticscience.org:8080/computesas/pjgsis, http://dev.biordf.net/~kawas/cgi-bin/getGOTermAssociations, http://sadiframework.org/examples/blast/Gallus+gallus, http://unbsj.biordf.net/name-search-sadi/getSimilarKeggPathwayNames, http://sadiframework.org/examples/blast/Prunus+dulcis, http://sadiframework.org/examples/keggCompound2PubChem, http://sadi-service.semanticscience.org/sadi-ChEBI-soap-wrapper/ChebiSoapGetOntologyParents, http://unbsj.biordf.net/FISHTOX-SADIServices/RefSeqAP2UniProt, http://unbsj.biordf.net/mi-sadi/mineTextForMutationImpacts, http://sadiframework.org/examples/blast/Oryctolagus+cuniculus, http://sadiframework.org/services/getTaxIDFromUniProt, http://unbsj.biordf.net/util-sadi-serv/getPDFByPMCID, http://sadi-service.semanticscience.org/sadi-ChEBI-soap-wrapper/ChebiSoapGetChemicalStructures, http://unbsj.biordf.net/lipids-sadi/getLMLipidCategoryRelatedToProtein, http://sadi-service.semanticscience.org/PharmGKB-SADI-Wrapper/GetDiseaseRelatedPathways, http://sadi-service.semanticscience.org/PharmGKB-SADI-Wrapper/GetDrugTradeNames, http://sadiframework.org/examples/blast/Quercus+robur, http://s7.semanticscience.org/~ben/cgi-bin/CryptoDB/get_feature_info, http://s5.semanticscience.org:8080/moref/moref, http://sadiframework.org/examples/blast/Secale+cereale, http://sadi-service.semanticscience.org/sadi-rest-ncbi-eutils-pubmed/Getaffiliationfrompmid, http://sadiframework.org/examples/blast/Bubalus+bubalis, http://dev.biordf.net/~kawas/cgi-bin/getEcGeneComponentParts, http://sadiframework.org/examples/blast/Yarrowia+lipolytica, http://unbsj.biordf.net/lipids-sadi/getLMSDRecordBySMILES, http://cbakerlab.unbsj.ca/util-sadi-serv/getPMIDByPMCID, http://sadi-service.semanticscience.org/sadi-rest-ncbi-eutils-pubmed/Getpaginationfrompmid, http://sadiframework.org/examples/blast/Aspergillus+fumigatus, http://unbsj.biordf.net/name-search-sadi/getSimilarLipidNames, http://sadiframework.org/examples/blast/Drosophila+melanogaster, http://unbsj.biordf.net/lipids-sadi/getLMSDRecordByLMID, http://sadi-service.semanticscience.org/sadi-ChEBI-soap-wrapper/ChebiSoapGetChebiAsciiName, http://unbsj.biordf.net/lipids-sadi/getLMLipidClassByName]

The code is available from the bioclipse.rdf repository.