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Sunday, July 12, 2015

PubMed Commons: comments, pointers, questions, etc

I could have sworn I had blogged about this already, but cannot find it in my blog archives. If you do not know PubMed Commons yet, check it out! As the banner on the right shows, they're in Pilot mode (yeah, why stick to alpha/beta release tagging), and it already found several uses, as explain in this blog post. Journal clubs is one of them, which they introduced at the end of last year. The pilot started out with giving access to PubMed authors, but since many of us are, that was never really a reason not to give it a try. Comments on PubMed Commons automatically get picked up by other platforms, like PubPeer, and commentators get a profile page, this is mine.

Like the use cases people have adopted - see the above linked blog post - I have found a number of use cases:

  1. additional information:
    1. missing citations (1)
    2. where data can be downloaded (1)
  2. where data from that paper was deposited:
    1. paper figures available in WikiPathways (1,2,3,4)
    2. authors uploaded data/figures to FigShare but the paper does not link it (1)
    3. authors uploaded data/figures to DataDryad but the paper does not link it (1)
  3. me too:
    1. CDK can help (1)
  4. commenting (1) and questions (2)
  5. a closed paper was made gold Open Acces (1)
  6. the source code behind that paper moved
    1. from Google Code to GitHub (1)
So, get your account today, and start updating your papers which changed locations. Because we all now the bit rot in website locations in papers. Show PubMed how you like to improve scientific communication via the publishing platform!