This week I have been porting the PubChem plugin for Bioclipse 1.2 to the new manager-based architecture. While still working on the Wizards, you can run the following JavaScript in Bioclipse2 from SVN and from the next beta (*):
*) There was some confusion on the two beta Bioclipse2 releases so far. Some people expected a release without any bugs left. That release is what we planned to call a Release Candidate. We agree that the first two betas at least turned out to be more alpha than we actually hoped, and we thank everyone who has given these releases a go. Those who tried several development releases of Bioclipse2 saw a lot of ongoing development, and we are fixing any bug reported on these releases. So, do not hesitate in reporting bugs!
Earlier in this series:
So what does it use underneath for the actual communications with PubChem servers? Just curious...
ReplyDeleteThe Entrez Eutils. I ported the old Bioclipse1 code, which was written prior to the PUG.
ReplyDeleteSee:
NewFromPubChemWizard.java
Hi Egon,
ReplyDeleteThis is a nice one. I usually have a whole list of names I need to find and wanted to create something like this in taverna but this seems much easier.
Cheers,
Peter
Peter, we can even create a SD file from it right now, and I should make an example script for that too...
ReplyDeleteHi Egon,
ReplyDeleteJust wondering where to get the pubchem manager from. It does not seem to be in the latest bioclipse release (2 beta 5)
Cheers,
Peter
We did not set up an update site for beta5... I'm starting to get convinced we should have.
ReplyDeleteI also realize that we need good webpages to describe what is found in what feature...