Oct
23
#oaweek2012 : Open Science: examples in bioinformatics
My presentation I will give in about 75 minutes at Maastricht University as part of #oaweeknl.
Oct
7
CDK 1.5.1: the changes, the authors, and the reviewers
Before you continue reading this post, please be aware that the CDK 1.5.x series is the not a new stable release, but the current unstable, development release, where all the API changes happen. For stable releases, only look at 1.4.x, such as the just released CDK 1.4.14.
The first alpha release from the cdk-1.5.x series (we do not have a special branch for that; the matching branch is master) was release 1.5.0 which was released in January!.
The first alpha release from the cdk-1.5.x series (we do not have a special branch for that; the matching branch is master) was release 1.5.0 which was released in January!.
Oct
7
CDK 1.4.14: the changes, the authors, and the reviewers
And here are the changes in CDK 1.4.14. Compared to 1.4.12/1.4.13 I think this release is much more interesting. For example, as of this release, we report details on the IO options for readers and writers automatically in the JavaDoc (see this post), it has improvements to the CML stack, and tetrahedral stereochemistry encoded with the ITetrahedralChirality interface is now reflected in generated InChIs.
Oct
7
CDK 1.4.12: the changes, the authors, and the reviewers
I was just about to write up the changes of CDK 1.4.14 I uploaded to SourceForge last week, when I noticed that I forgot the blog the changes for CDK 1.4.13 and 1.4.12. Well, fortunately, those two releases are identical, caused by me fighting the SourceForge file system. So, first I will post the changes of that release then.
Oct
7
What would you do with 5M euro?
Two weeks ago an experienced researcher asked me this question. I was speechless. I am not sure the other understood that I was more wondering where to start, with so many things I want to get done, or whether I had literally no idea how to spend that other than propagating my current post-doc position.
Oct
6
LinkedChemistry.info now listed on identifiers.org as ChEMBL-RDF provider
As part of the Open PHACTS hackathon in Manchester last week, we working on further integration with the identifiers.org project at the EBI.
