I have been happily tweeting the BioMedBridges meeting in Hinxton last week using the #lifesciencedata hashtag, along with more than 100 others, though a small subset was really active. A lot has been published about using Twitter at conference, like the recent paper by Ekins et al (doi:10.1371/journal.pcbi.1003789).
The backchannel discussions only get better when more and more people join, and when complementary information is passed around. For example, I tend to tweet links to papers that appear on slides, chemical/protein structure mentioned, etc. I have also started tweeting ORCID identifiers of the speakers if I can find them, in addition to adding them to a Lanyrd page.
Like at most meetings, people ask me about this tweeting. Why I do it? Doesn't it distract you from the presentation? I understand these questions.
First, I started recording my notes of meetings electronically during my PhD thesis, because I needed to write a summary of each meeting for my funder. So, when Twitter came along, and after I had already built up some experience blogging summaries of meetings, I realized that I might as well tweet my notes. And since I was looking up DOIs of papers anyway, the step was not big. The effect, however, was use. People started replying, some at the conference itself, some not. This resulted in a lot of meetings with people at the conference. Tweetups do not regularly happen anymore, but it's a great first line for people, "hey, aren't you doing all that blogging", and before you know it, you are talking science.
Second, no, it does not significantly distract me from the talk. First, like listening to a radio while studying, it keeps me focused. Yes, I very much think this differs from person to person, and I am not implying that it generally is not distracting. But it keeps me busy, which is very useful during some talks, when people in the audience otherwise start reading email. If I look up details (papers, project websites, etc) from the talk, I doubt I am more distracted than some others.
Third: what about keeping up. Yes, that's a hard one, and I was beaten in coverage speed by others during this meeting. That was new to me, but I liked that. Sadly, some of the most active people left the meeting after the first day. So, I was wondering how I could speed up my tweeting, or, alternatively, how it would take me less time so that I can read more of the other tweets. Obvious candidates are blogging additional information like papers, etc.
So, I started working on some R code to help me tweet faster, and using the great collection of rOpenSci packates, I have come up with the following two first helper methods. In both examples, I am using an #example hashtag.
Tweeting papers
This makes use of the rcrossref package to fetch the name of the first author and title of the paper.
Tweeting speakers
Or perhaps, tweeting people. This bit of code makes use of the rorcid package.
Of course, you are most interesting in the code than the screenshots, so here it is (public domain; I may make a package out of this):
library(twitteR)
library(rorcid)
library(rcrossref)
setup_twitter_oauth("YOURINFO", "YOURINFO")
tweetAuthor = function(orcid=NULL, hashtag=NULL) {
person = as.orcid(orcid)
firstName = person[[1]]$"orcid-bio"$`personal-details`$`given-names`$value
surname = person[[1]]$"orcid-bio"$`personal-details`$`family-name`$value
orcidURL = person[[1]]$"orcid-identifier"$uri
tweet(
paste(firstName, " ", surname, " orcid:",
orcid, " ", orcidURL, " #", hashtag, sep="")
)
}
tweetPaper = function(doi=NULL, hashtag=NULL) {
info = cr_cn(dois=doi, format="citeproc-json")
tweet(
paste(
info$author[[1]]$family, " et al. \"",
substr(info$title, 0, 60), "...\" ",
"http://dx.doi.org/", info$DOI, " #", hashtag, sep=""
)
)
}
Getting your twitteR to work (the authentication, that is) may be the hardest part. I do plan to add further methods like: tweetCompound(), tweetProtein(), tweetGene(), etc...
Jul
30
Please change your RSS URL of this blog
Hi all, as posted about a year ago, I moved this blog to a different domain and different platform. Noting that I still have many followers on this domain (and not on my new domain, including over 300 on Feedly.com along).
Aug
18
Last post here / the Freebie model online
This is my last post on blogger.com. At least, that is the plan. It has been a great 18 years. I like to thank the owners of blogger.com and Google later for providing this service. I am continuing the chem-bla-ics on a new domain: https://chem-bla-ics.linkedchemistry.info/
I, like so many others, struggle with choosing open infrastructure versus the freebie model. Of course, we know these things come and go. Google Reader, FriendFeed, Twitter/X (see doi:10.1038/d41586-023-02554-0).
I, like so many others, struggle with choosing open infrastructure versus the freebie model. Of course, we know these things come and go. Google Reader, FriendFeed, Twitter/X (see doi:10.1038/d41586-023-02554-0).
Aug
12
Boiling points in Wikidata
Some days ago, I started added boiling points to Wikidata, referenced from Basic Laboratory and Industrial Chemicals (wikidata:Q22236188), David R. Lide's 'a CRC quick reference handbook' from 1993 (well, the edition I have). But Wikidata wants pressure (wikidata:P2077) info at which the boiling point (wikidata:P2102) was measured. Rightfully so. But I had not added those yet, because it slows me and can be automated with QuickStatements.
Aug
8
History, provenance, detail
Just a quick note: I just love the level of detail Wikidata allows us to use. One of the marvels is the practices of 'named as', which can be used in statements for subject and objects. The notion and importance here is that things are referred to in different ways, and these properties allows us to link the interpretation with the source.
Aug
4
Blog planets: blogging about Debian, GNOME, Wikimedia, FSFE, and many more
I am still an avid user of RSS/Atom feeds. I use Feedly daily, partly because of their easy to use app. My blog is part of Planet RDF, a blog planet. Blog planets aggregate blogs from many people around a certain topic. It's like a forum, but open, free, community driven. It's exactly what the web should be.
Jul
27
Archiving and updating my blog
This blog is almost 18 years old now. I have long wanted to migrate it to a version control system and at the same time have more control over things. Markdown would be awesome. In the past year, I learned a lot about the power of Jekyll and needed to get more experienced with it to use it for more databases, like we now do for WikiPathways.
So, time to migrate this blog :) This is probably a multiyear project, so feel free to continue reading it hear.
So, time to migrate this blog :) This is probably a multiyear project, so feel free to continue reading it hear.
Jul
7
Universities and open infrastructures
The role of a university is manifold. Being a place where people can find knowledge and the track record how that knowledge was reached is often seen as part of that. Over the past decades universities outsources this role, for example to publishers. This is seeing a lot of discussion and I am happy to see that the Dutch Universities are taking back control fast now.
Jul
6
Journal Rankings
I am pleased to learn that the Dutch Universities start looking at rankings of a more scientific way. It is long overdue that we take scientific peer review of the indicators used in those rankings seriously, instead of hiding beyond fud around the decline of quality of research.
So, what defines the quality of a journal? Or better, of any scholarly dissemination channel? After all, some databases do better peer review than some journals.
So, what defines the quality of a journal? Or better, of any scholarly dissemination channel? After all, some databases do better peer review than some journals.
Jul
2
Qeios, an open dissemination platform for research output
A bit over a year ago I got introduced to Qeios when I was asked to review an article by Michie, West, and Hasting: "Creating ontological definitions for use in science" (doi:10.32388/YGIF9B.2). I wrote up my thoughts after reading the paper, and the review was posted openly online and got a DOI. Not the first platform to do this (think F1000), but it is always nice to see some publishers taking publishing seriously. Since then, I reviewed two more papers.
Jul
1
Twitter exits FAIR and is no longer a dissemination solution
Update: Musk said this was a temporary measure. The problem was scraping of content, you know, the content we openly share on Twitter. Maybe they could have done this with APIs. Oh wait, they closed those behind a very expensive paywall. Update 2: Another rumor is that the forgot to make a deal with a cloud provider and suddenly were left with a fraction of the computing power.
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