Update 2021-02: this post is still the more read post in my blog. Welcome! Some updates:
- Ammar Ammar in our BiGCaT group has set up a new SPARQL endpoint. Please use and tweet. blog, or otherwise let others now how you use the ChEMBL RDF.
- Since this post I have blogged a lot more about ChEMBL.
I'm having a really bad month, as you can see from the number of posts. Too much to do, too little time. One of the things I have been doing in the past weeks is update the RDF for ChEMBL, now up to version 09. The SPARQL end point has not been updated yet (which is still at ChEBML 04), but you can now download the triples for self-hosting here. Like the database itself, the RDF is available under the CC-SA-BY license, requiring attribution to both the ChEMBL team as well as our efforts to create the RDF (see this README).
Willighagen, E. (2011, April 21). ChEMBL 09 as RDF. Chem-bla-ics. https://doi.org/10.59350/9w84r-evn93
Hi, Egon, could you give some SPARQL along with the endpoint? that might be more useful.
ReplyDeleteThis is exactly what our Ammar's Snorql UI is now doing: https://chemblmirror.rdf.bigcat-bioinformatics.org/
DeleteCheck Figure 4 and 5 of this paper:
ReplyDeletehttp://www.jbiomedsem.com/content/2/S1/S6
The SPARQL end point has been updated (via the SNORQL GUI):
ReplyDeletehttp://rdf.farmbio.uu.se/chembl/snorql/
Current SPARQL endpoint runs at https://chemblmirror.rdf.bigcat-bioinformatics.org/
ReplyDelete