Paper: "Guiding the choice of informatics software and tools for lipidomics research applications"

Screenshot of this LIPID MAPS webpage.

One of the outcomes of the EpiLipidNET COST action is a paper about the data analysis of experimental lipidomics data: Guiding the choice of informatics software and tools for lipidomics research applications (doi:10.1038/s41592-022-01710-0).

Our BiGCaT team wrote up BridgeDb for identifier mapping and WikiPathways for pathways/enrichment analysis. See also the WikiPathways Lipids Portal.

But I also wanted to map the tools from the article to ELIXIR databases, particularly FAIRsharing, bio.tools, and TeSS. I wish journals would just require this as part of the wish to make science more FAIR. While at it, I realized I could also add Wikidata item annotations and link to Scholia (see also these blog posts). And while add it, I improved the links between the items on the software with the journal articles describing the software and tools, including the citation networks.

I know it takes time and I would have loved to have this curation done before the publication. But I couldn't. But I just started adding the annotation in this GitHub repository: